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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201337197_201337402_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201337197 - 201337402
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
CTTGCAGGAAAT
Flanking Amino Acid:
SAKAGYNVKQKKGFRRKLCG
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
82.1
0.72
0.7
81.3
23.8
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
41
-0.6
2.4
63.14
46.4

Associated Gene:

Gene:
RAB6A
Ensembl Gene ID:
ENSAPLG00000027812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036403
201335789 - 201345954
10166