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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201337497_201338410_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201337497 - 201338410
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGAGG
5'SS Class:
major
3'SS Sequence:
TTATCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTTCTGACT
Flanking Amino Acid:
VGNKTDLADKRQVSIEEGER
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.5
46.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80.7
0.69
0.8
73.6
36.7
Minor 5ss
30.6
-2.2
3.3
39.8
45.8
Minor BPS
66.3
0.59
1.6
87.21
31.8

Associated Gene:

Gene:
RAB6A
Ensembl Gene ID:
ENSAPLG00000027812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036403
201335789 - 201345954
10166