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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201338523_201340464_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201338523 - 201340464
Intron Length:
1942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
TGTTCTCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
CCTGCCCTGATA
Flanking Amino Acid:
AAAVVVYDITNVNSFQQTTK
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
80.8
33.6
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
71.8
0.49
1
66.3
40.7
Minor 5ss
39.6
-1.2
3.1
50.6
40.3
Minor BPS
48.9
-0.1
1.8
58.33
42

Associated Gene:

Gene:
RAB6A
Ensembl Gene ID:
ENSAPLG00000027812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036403
201335789 - 201345954
10166