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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201341866_201345895_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201341866 - 201345895
Intron Length:
4030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTCAAATGAAAT
Flanking Amino Acid:
MYDSFDNTYQATIGIDFLSK
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
85.9
0.81
0.7
77.8
31.1
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
45
-0.3
2
65.8
43.6

Associated Gene:

Gene:
RAB6A
Ensembl Gene ID:
ENSAPLG00000027812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036403
201335789 - 201345954
10166