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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201375957_201378078_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
201375957 - 201378078
Intron Length:
2122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGCTCA
5'SS Class:
weak_major
3'SS Sequence:
TGTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCTAT
U12 Branch Point Sequence:
TCCTCCCGAGCT
Flanking Amino Acid:
TTFSRIHQKSVTCLDISSGG
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.4
59.5
42.4
Major BPS
48.5
-0
1.4
47.8
45.7
Major PPT
80
0.68
0.8
73.8
31.3
Minor 5ss
45.1
-0.5
2.7
52.4
44.6
Minor BPS
48.1
-0
2
69.61
46.8

Associated Gene:

Gene:
PAAF1
Ensembl Gene ID:
ENSAPLG00000007787
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008086
201370974 - 201383228
12255