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Intron Name: Anas_platyrhynchos_platyrhynchos_1_201378707_201379687_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201378707 - 201379687

Intron Length:

981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGAGT

5'SS Class:

strong_major

3'SS Sequence:

TGCTCTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

TGTCTCTGAACG

Flanking Amino Acid:

CAVTFQGHKGGILDTAIVDR

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.4

43.3

Major BPS

69.8

0.49

37.5

Major PPT

75.3

0.57

0.9

69.1

Minor 5ss

32.6

-2

3.5

48.3

47.5

Minor BPS

62.1

0.24

1.5

66.64

40.5

Associated Gene:

Gene:

PAAF1

Ensembl Gene ID:

ENSAPLG00000007787

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008086

201370974 - 201383228

12255