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Intron Name: Anas_platyrhynchos_platyrhynchos_1_201380316_201380841_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201380316 - 201380841

Intron Length:

526

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

CCTCCCTTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

AGGCTCTGACCC

Flanking Amino Acid:

QGVGLQSRQPVFLFVGSDAF

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.2

Major BPS

69.1

0.47

60.7

37.6

Major PPT

77.5

0.62

0.7

71.8

26.1

Minor 5ss

33.1

-1.9

3.2

43.9

43.7

Minor BPS

45.8

-0.3

1.7

51.62

Associated Gene:

Gene:

PAAF1

Ensembl Gene ID:

ENSAPLG00000007787

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008086

201370974 - 201383228

12255