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Intron Name: Anas_platyrhynchos_platyrhynchos_1_201380958_201381438_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201380958 - 201381438

Intron Length:

481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCATAAT

U12 Branch Point Sequence:

CAGACCATAATT

Flanking Amino Acid:

NIYQLDVRNTNAPIQVIQRS

Intron Amino Acid Position:

278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

0.9

72.1

31.2

Major BPS

62.9

0.32

1.2

63.9

38.4

Major PPT

89.5

0.89

0.6

20.1

Minor 5ss

30.2

-2.3

3.1

36.2

34.2

Minor BPS

53.6

0.19

1.7

66.88

43.8

Associated Gene:

Gene:

PAAF1

Ensembl Gene ID:

ENSAPLG00000007787

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008086

201370974 - 201383228

12255