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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201384576_201385742_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
201384576 - 201385742
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGGGGG
5'SS Class:
weak_major
3'SS Sequence:
TCCCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCTTCACCC
Flanking Amino Acid:
REATTADIQRAYRLQALRSH
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.3
0.15
1.4
45.7
44.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
74.6
0.55
0.7
69
24.8
Minor 5ss
24.1
-3
3.3
23.8
37.7
Minor BPS
57.1
0.2
1.8
70.01
41.9

Associated Gene:

Gene:
DNAJB13
Ensembl Gene ID:
ENSAPLG00000016880
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018016
201384508 - 201388221
3714