Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201387216_201387411_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201387216 - 201387411

Intron Length:

196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTGCCCCCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

TCTTCCTCACCC

Flanking Amino Acid:

CTKKIKISRRVMNEDGQTST

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

71.1

37.9

Major BPS

72.4

0.56

73.5

32.5

Major PPT

60.9

0.24

59.8

30.2

Minor 5ss

31.4

-2.1

3.6

39.6

45.9

Minor BPS

62.3

0.37

1.9

74.56

42.5

Associated Gene:

Gene:

DNAJB13

Ensembl Gene ID:

ENSAPLG00000016880

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018016

201384508 - 201388221

3714