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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201387526_201387996_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201387526 - 201387996
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
CCTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCCATCTCCATT
Flanking Amino Acid:
RITFEKEGDQGPNVIPADIT
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
44.8
-0.3
1.9
59.71
44.5

Associated Gene:

Gene:
DNAJB13
Ensembl Gene ID:
ENSAPLG00000016880
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018016
201384508 - 201388221
3714