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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201389946_201390034_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201389946 - 201390034
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTCACGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATCCCCTTCACG
Flanking Amino Acid:
DALLRAQLLTDNVPCHFVAA
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.6
0.46
0.9
61.4
39.9
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
58.1
0.11
1.9
63.17
44.5

Associated Gene:

Gene:
UCP3
Ensembl Gene ID:
ENSAPLG00000007521
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007829
201389484 - 201391163
1680