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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201390588_201390717_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201390588 - 201390717
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTATTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCATCCCAAATT
Flanking Amino Acid:
KQLYTPKGAESTGLGARLLA
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75
35.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
75.8
0.58
0.9
70
36.4
Minor 5ss
32.6
-2
3.3
40.4
40
Minor BPS
52.9
0.17
2
73.27
43.8

Associated Gene:

Gene:
UCP3
Ensembl Gene ID:
ENSAPLG00000007521
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007829
201389484 - 201391163
1680