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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201390929_201391037_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201390929 - 201391037
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CGGCGCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAT
U12 Branch Point Sequence:
GGCGCCCTACAG
Flanking Amino Acid:
PLDTAKVRLQIQGEVRIPRS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
57.3
0.18
1.3
48.8
46.3
Major PPT
63.2
0.3
1
53.6
36.8
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
39.3
-0.9
2
38.72
43.8

Associated Gene:

Gene:
UCP3
Ensembl Gene ID:
ENSAPLG00000007521
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007829
201389484 - 201391163
1680