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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201396807_201399759_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201396807 - 201399759
Intron Length:
2953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCCTTTTATT
Flanking Amino Acid:
MLSISSRPSTQVPQSQ*
Intron Amino Acid Position:
2298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.4
41.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.7
0.76
0.9
83.6
31.8
Minor 5ss
38.2
-1.3
2.7
49.6
40.1
Minor BPS
61.8
0.45
1.6
76.99
39.9

Associated Gene:

Gene:
C2CD3
Ensembl Gene ID:
ENSAPLG00000007182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007477
201396786 - 201439805
43020