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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201399854_201400276_R

Intron Information:

Intron Rank:
30
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
201399854 - 201400276
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
CAGCTCTGCTCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGTTCCTTAACA
Flanking Amino Acid:
SGKSEKPTIVLPEPVVVPNF
Intron Amino Acid Position:
2266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
63.9
0.31
1
61.2
39.8
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
91.5
1.3
0.8
92.6
26.7

Associated Gene:

Gene:
C2CD3
Ensembl Gene ID:
ENSAPLG00000007182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007477
201396786 - 201439805
43020
ENSAPLT00000007464
201393637 - 201439805
46169
ENSAPLT00000044891
201396618 - 201439805
43188
ENSAPLT00000038297
201392301 - 201439805
47505
ENSAPLT00000035969
201397185 - 201439805
42621