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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201405709_201407335_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201405709 - 201407335
Intron Length:
1627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTAAATTAATA
Flanking Amino Acid:
LVFKVWHKAAETERVIGFAS
Intron Amino Acid Position:
1694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.7
0.76
0.7
76.8
31.9
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
52.5
0.07
1.8
66.42
39.8

Associated Gene:

Gene:
C2CD3
Ensembl Gene ID:
ENSAPLG00000007182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007464
201393637 - 201439805
46169
ENSAPLT00000044891
201396618 - 201439805
43188
ENSAPLT00000038297
201392301 - 201439805
47505
ENSAPLT00000035969
201397185 - 201439805
42621
ENSAPLT00000007477
201396786 - 201439805
43020