About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201408981_201412227_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201408981 - 201412227
Intron Length:
3247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAC
5'SS Class:
major
3'SS Sequence:
CGTGTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGAATTTAATT
Flanking Amino Acid:
VERAMHLSLKGSPLTEREVT
Intron Amino Acid Position:
1625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
65.6
40.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.8
0.49
1
66.9
42.9
Minor 5ss
37.5
-1.4
3.2
50.1
46.5
Minor BPS
56.3
0.28
1.6
69.08
42.4

Associated Gene:

Gene:
C2CD3
Ensembl Gene ID:
ENSAPLG00000007182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038297
201392301 - 201439805
47505
ENSAPLT00000035969
201397185 - 201439805
42621
ENSAPLT00000007477
201396786 - 201439805
43020
ENSAPLT00000007464
201393637 - 201439805
46169
ENSAPLT00000044891
201396618 - 201439805
43188