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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201415270_201416134_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201415270 - 201416134
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATTTACAAAATT
Flanking Amino Acid:
FSVYHQSVKSATDTLAARTS
Intron Amino Acid Position:
1282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.4
40.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
82
0.72
0.9
73.1
41.5
Minor 5ss
31.8
-2.1
3.1
36.7
42.5
Minor BPS
49.8
0.06
2.1
76.45
40.1

Associated Gene:

Gene:
C2CD3
Ensembl Gene ID:
ENSAPLG00000007182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007477
201396786 - 201439805
43020
ENSAPLT00000007464
201393637 - 201439805
46169
ENSAPLT00000044891
201396618 - 201439805
43188
ENSAPLT00000038297
201392301 - 201439805
47505
ENSAPLT00000035969
201397185 - 201439805
42621