Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201419043_201420767_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201419043 - 201420767

Intron Length:

1725

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGAAT

5'SS Class:

major

3'SS Sequence:

TGTGTCTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAGCAT

U12 Branch Point Sequence:

AATAGCATGACT

Flanking Amino Acid:

GGGIQFEVWCRYYYPNVRDQ

Intron Amino Acid Position:

1096

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

72.2

Major BPS

54.5

0.11

1.4

65.8

Major PPT

77.8

0.63

0.9

69.3

41.7

Minor 5ss

32.2

-2

3.5

47.9

47.8

Minor BPS

47.5

-0.1

2.1

68.48

41.9

Associated Gene:

Gene:

C2CD3

Ensembl Gene ID:

ENSAPLG00000007182

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038297

201392301 - 201439805

47505

ENSAPLT00000035969

201397185 - 201439805

42621

ENSAPLT00000007477

201396786 - 201439805

43020

ENSAPLT00000007464

201393637 - 201439805

46169

ENSAPLT00000044891

201396618 - 201439805

43188