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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20143172_20162410_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20143172 - 20162410
Intron Length:
19239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCAATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
MQLELKEFLRMINIHVQIL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.1
0.68
0.8
79.6
32.7
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
IL17REL
Ensembl Gene ID:
ENSAPLG00000016050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016751
20094523 - 20162705
68183