About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201437391_201438018_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201437391 - 201438018
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCTTT
5'SS Class:
major
3'SS Sequence:
TTCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTATTTTCACAT
Flanking Amino Acid:
PTSEKLGELQVSLVLEPLSE
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.6
40.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
48.5
-0.1
3.2
73.2
43.6
Minor BPS
45.2
-0.2
1.8
61.38
42.7

Associated Gene:

Gene:
C2CD3
Ensembl Gene ID:
ENSAPLG00000007182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035969
201397185 - 201439805
42621
ENSAPLT00000007477
201396786 - 201439805
43020
ENSAPLT00000007464
201393637 - 201439805
46169
ENSAPLT00000044891
201396618 - 201439805
43188
ENSAPLT00000038297
201392301 - 201439805
47505