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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201438177_201439450_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201438177 - 201439450
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
CTGATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCCTCCTGATTT
Flanking Amino Acid:
GPRQLAAYLTDMGVLGLEVM
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68.8
43.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
81.8
0.72
0.9
76.4
37.5
Minor 5ss
37.1
-1.5
3
40.5
45.5
Minor BPS
56.6
0.29
1.8
72.32
45

Associated Gene:

Gene:
C2CD3
Ensembl Gene ID:
ENSAPLG00000007182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038297
201392301 - 201439805
47505
ENSAPLT00000035969
201397185 - 201439805
42621
ENSAPLT00000007477
201396786 - 201439805
43020
ENSAPLT00000007464
201393637 - 201439805
46169
ENSAPLT00000044891
201396618 - 201439805
43188