Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201445056_201445757_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

201445056 - 201445757

Intron Length:

702

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCCGTGTG

5'SS Class:

major

3'SS Sequence:

AATTCAAAAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATTCAA

U12 Branch Point Sequence:

CTTTTCCTAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.3

67.3

44.3

Major BPS

74.2

0.6

0.9

75.7

Major PPT

56.6

0.15

1.1

41.3

Minor 5ss

30.6

-2.2

3.3

40.7

45.6

Minor BPS

0.59

1.7

79.54

36.7

Associated Gene:

Gene:

PPME1

Ensembl Gene ID:

ENSAPLG00000006631

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044700

201444928 - 201461899

16972

ENSAPLT00000032428

201444928 - 201461899

16972