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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201450366_201452870_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201450366 - 201452870
Intron Length:
2505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TCCCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GGCTTTGCAAAT
Flanking Amino Acid:
HSALSWAVFTSAIISRIQCR
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
68
0.45
1
57.8
39
Major PPT
84.9
0.78
0.7
79.8
25.6
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
40.7
-0.6
2.1
54.18
41.5

Associated Gene:

Gene:
PPME1
Ensembl Gene ID:
ENSAPLG00000006631
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032428
201444928 - 201461899
16972
ENSAPLT00000028571
201440071 - 201461899
21829
ENSAPLT00000006929
201447297 - 201461899
14603
ENSAPLT00000044700
201444928 - 201461899
16972