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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201452929_201453483_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201452929 - 201453483
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTCAGCTTAAGT
Flanking Amino Acid:
RIVALDLRGHGETKVRNPED
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
55.2
0.24
2.1
76.23
46.3

Associated Gene:

Gene:
PPME1
Ensembl Gene ID:
ENSAPLG00000006631
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032428
201444928 - 201461899
16972
ENSAPLT00000028571
201440071 - 201461899
21829
ENSAPLT00000006929
201447297 - 201461899
14603
ENSAPLT00000044700
201444928 - 201461899
16972