About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201456035_201456382_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201456035 - 201456382
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTTCTTCACTT
Flanking Amino Acid:
FKSLENAIEWSVKSGQIRNL
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
55.5
0.25
1.8
75.4
42.3

Associated Gene:

Gene:
PPME1
Ensembl Gene ID:
ENSAPLG00000006631
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032428
201444928 - 201461899
16972
ENSAPLT00000028571
201440071 - 201461899
21829
ENSAPLT00000006929
201447297 - 201461899
14603
ENSAPLT00000044700
201444928 - 201461899
16972