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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201523439_201528161_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201523439 - 201528161
Intron Length:
4723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CGTTGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTTTCCTCACAC
Flanking Amino Acid:
RKSKNPAGGHGPDMFCDFNG
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79.2
0.66
0.8
76.9
37.3
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
52.3
0.05
2
67.84
43.5

Associated Gene:

Gene:
CHRDL2
Ensembl Gene ID:
ENSAPLG00000005779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005980
201523393 - 201539711
16319
ENSAPLT00000045149
201523393 - 201545005
21613