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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201528275_201528576_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201528275 - 201528576
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAT
U12 Branch Point Sequence:
TGTAGATGAAAA
Flanking Amino Acid:
MYCIRCSCSENGNTRCYRIQ
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1
75.5
40.4
Major BPS
64
0.35
1.2
60.7
45.9
Major PPT
84.4
0.77
0.7
77.3
31.4
Minor 5ss
35.8
-1.6
3.2
51.3
45.1
Minor BPS
42.7
-0.5
2.1
56.97
41.2

Associated Gene:

Gene:
CHRDL2
Ensembl Gene ID:
ENSAPLG00000005779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036039
201521773 - 201545005
23233
ENSAPLT00000005980
201523393 - 201539711
16319
ENSAPLT00000045149
201523393 - 201545005
21613