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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201528671_201529134_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201528671 - 201529134
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGGGAA
5'SS Class:
major
3'SS Sequence:
TCCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GCTCTCTTATCC
Flanking Amino Acid:
DPQQCCPRCLEPNSPSGLRA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
60.5
40.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
87.1
0.83
0.7
79.7
32.2
Minor 5ss
27.6
-2.6
3.7
37
47.6
Minor BPS
57
0.2
1.6
64.08
41.4

Associated Gene:

Gene:
CHRDL2
Ensembl Gene ID:
ENSAPLG00000005779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045149
201523393 - 201545005
21613
ENSAPLT00000036039
201521773 - 201545005
23233
ENSAPLT00000005980
201523393 - 201539711
16319