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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201529278_201531659_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
201529278 - 201531659
Intron Length:
2382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGCCTC
5'SS Class:
weak_major
3'SS Sequence:
TCCTGTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGACAATACTT
Flanking Amino Acid:
PNQCVQCSCSEGQIYCGLVT
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.4
58.4
46.6
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
69.7
0.44
0.8
61.8
34.9
Minor 5ss
44.3
-0.6
3.1
64.6
39.9
Minor BPS
42
-0.5
2
58.51
44.6

Associated Gene:

Gene:
CHRDL2
Ensembl Gene ID:
ENSAPLG00000005779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045149
201523393 - 201545005
21613
ENSAPLT00000036039
201521773 - 201545005
23233
ENSAPLT00000005980
201523393 - 201539711
16319