Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201534301_201535214_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201534301 - 201535214

Intron Length:

914

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGAC

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTCCTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAG

U12 Branch Point Sequence:

TTCTCTTTGTCT

Flanking Amino Acid:

KIVLKEKHKKACVYNGKTYS

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.5

32.8

Major BPS

58.3

0.21

1.7

71.4

45.1

Major PPT

82.3

0.73

0.8

74.1

36.6

Minor 5ss

29.5

-2.3

3.5

40.1

46.3

Minor BPS

48.5

-0

3.5

82.51

39.6

Associated Gene:

Gene:

CHRDL2

Ensembl Gene ID:

ENSAPLG00000005779

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036039

201521773 - 201545005

23233

ENSAPLT00000005980

201523393 - 201539711

16319

ENSAPLT00000045149

201523393 - 201545005

21613