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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201562599_201563330_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201562599 - 201563330
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CAATGTCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TAACTCTTGATT
Flanking Amino Acid:
KTELEPASSEVSAGGKRRKR
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
71
0.47
0.9
66.4
40.2
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
64
0.52
1.2
73.73
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005428
201557975 - 201584363
26389