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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201572710_201574037_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201572710 - 201574037
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTGTGGTTACAC
Flanking Amino Acid:
TKAEAKDAPGVSAVSSKPPA
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.4
35.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
42.5
-0.8
2.8
53.4
43.8
Minor BPS
39.2
-0.8
2.5
50.54
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005428
201557975 - 201584363
26389