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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201574303_201577041_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201574303 - 201577041
Intron Length:
2739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCGTCGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AATTTCTCACTC
Flanking Amino Acid:
IVKTNLHDCSKFSAIHCAAA
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.9
23.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
65.9
0.36
0.9
59.7
35.6
Minor 5ss
38.1
-1.3
3
49.4
41.3
Minor BPS
49.7
-0
1.8
61.71
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005428
201557975 - 201584363
26389