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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201577175_201578764_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201577175 - 201578764
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
GCTGTGCTAACA
Flanking Amino Acid:
VAVVREDKLEAMKSKLATIA
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
82.3
0.73
0.7
77.1
24.7
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
43.4
-0.5
2.3
55.78
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005428
201557975 - 201584363
26389