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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201581242_201582980_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201581242 - 201582980
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAC
U12 Branch Point Sequence:
AGGTGATTAACA
Flanking Amino Acid:
TLKVHVNQAKQMLYDYVERK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
75.9
39.9
Major BPS
61.1
0.28
1.1
69.4
35.9
Major PPT
83.9
0.76
0.9
80.6
37
Minor 5ss
42.5
-0.8
3.2
65
40.2
Minor BPS
51.1
0.03
2
63.88
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005428
201557975 - 201584363
26389