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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201633154_201634066_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201633154 - 201634066
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TCTTGGGTAAAT
Flanking Amino Acid:
FSTYVPTPFVPYAVQQLKAV
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.2
Major BPS
62.4
0.31
1
64
32.1
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
30.6
-2.2
2.9
38
41
Minor BPS
41.5
-0.5
2.8
68.4
48.2

Associated Gene:

Gene:
PGM2L1
Ensembl Gene ID:
ENSAPLG00000004794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004965
201623807 - 201645365
21559