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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201637400_201638173_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201637400 - 201638173
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
GAACACTTAAAT
Flanking Amino Acid:
DRLAVAEQQENGCWKVFTGN
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
54.4
0.22
1.6
67.76
41.4

Associated Gene:

Gene:
PGM2L1
Ensembl Gene ID:
ENSAPLG00000004794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004965
201623807 - 201645365
21559