About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201638355_201640198_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201638355 - 201640198
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
TCCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTATATAGAGC
Flanking Amino Acid:
IALKEGFHFEETLPGFKWIG
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
70.1
40.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82
0.72
0.8
79.7
32.2
Minor 5ss
36.9
-1.5
3.5
48.7
41.9
Minor BPS
40.4
-0.7
2.1
51.67
39.5

Associated Gene:

Gene:
PGM2L1
Ensembl Gene ID:
ENSAPLG00000004794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004965
201623807 - 201645365
21559