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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201641275_201641805_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201641275 - 201641805
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATCTTTTAACT
Flanking Amino Acid:
LAQKLIEIYETYGYHISKTS
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
73.2
39.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.4
0.86
0.6
84.9
22.7
Minor 5ss
41.9
-0.9
2.8
51.9
38.5
Minor BPS
71.8
0.76
1.1
80.75
34.3

Associated Gene:

Gene:
PGM2L1
Ensembl Gene ID:
ENSAPLG00000004794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004965
201623807 - 201645365
21559