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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201642225_201644262_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201642225 - 201644262
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTCCCTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTGGTGTTAACC
Flanking Amino Acid:
YAEMCALPEQSDRAVLEEEL
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
76.2
39.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
78.5
0.64
0.8
70.3
35.7
Minor 5ss
31.5
-2.1
2.5
37.7
39.6
Minor BPS
54.5
0.12
2.2
69.13
43

Associated Gene:

Gene:
PGM2L1
Ensembl Gene ID:
ENSAPLG00000004794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004965
201623807 - 201645365
21559