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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20165500_20167997_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20165500 - 20167997
Intron Length:
2498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTGTTTGAAAT
Flanking Amino Acid:
QVKKQEYRTEVSNNTLKDFD
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
57.2
0.3
1.6
77.37
39.2

Associated Gene:

Gene:
MLC1
Ensembl Gene ID:
ENSAPLG00000016154
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026583
20165113 - 20182875
17763
ENSAPLT00000016862
20165113 - 20182656
17544
ENSAPLT00000034625
20165113 - 20183258
18146
ENSAPLT00000033055
20165113 - 20182656
17544