About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201675702_201676130_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201675702 - 201676130
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
CGTGCCATAACA
Flanking Amino Acid:
GIQFMLLRILAWMPGPVLYG
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
53
0.08
1
61.4
34.3
Major PPT
78.9
0.65
0.8
72.2
32.4
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
59.2
0.28
1.8
69.03
43.1

Associated Gene:

Gene:
SLCO2B1
Ensembl Gene ID:
ENSAPLG00000003485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003603
201674302 - 201709590
35289