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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201676196_201677239_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201676196 - 201677239
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACA
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
SHTPSFMLILRSIQPEDKSF
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
25.7
-2.8
3.1
31.1
42.7
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
SLCO2B1
Ensembl Gene ID:
ENSAPLG00000003485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003603
201674302 - 201709590
35289