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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201677410_201681122_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201677410 - 201681122
Intron Length:
3713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCGAAT
U12 Branch Point Sequence:
ATCGAATGAGCA
Flanking Amino Acid:
VVNIDNNSVLNYTNCSCISK
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
60.8
0.27
1.3
69.7
35.5
Major PPT
81.7
0.71
0.7
75.9
26.1
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
39.4
-0.8
2
49.04
41.1

Associated Gene:

Gene:
SLCO2B1
Ensembl Gene ID:
ENSAPLG00000003485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003603
201674302 - 201709590
35289