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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20168163_20168249_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20168163 - 20168249
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
ATGTCTCTATTT
Flanking Amino Acid:
IFKNYPPAVKQSYDVLLLLL
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
86.3
29
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
82.8
0.74
0.7
81.3
29.4
Minor 5ss
49.5
-0
2.5
68.8
35.6
Minor BPS
49.7
0.06
1.9
70.61
41

Associated Gene:

Gene:
MLC1
Ensembl Gene ID:
ENSAPLG00000016154
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026583
20165113 - 20182875
17763
ENSAPLT00000016862
20165113 - 20182656
17544
ENSAPLT00000034625
20165113 - 20183258
18146
ENSAPLT00000033055
20165113 - 20182656
17544