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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20168373_20169404_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20168373 - 20169404
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTTATT
Flanking Amino Acid:
VAAEYPSKCLVEVLIAISSV
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78
0.63
0.9
77.8
35.4
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
61.4
0.44
1.9
82.19
38.8

Associated Gene:

Gene:
MLC1
Ensembl Gene ID:
ENSAPLG00000016154
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026583
20165113 - 20182875
17763
ENSAPLT00000016862
20165113 - 20182656
17544
ENSAPLT00000034625
20165113 - 20183258
18146
ENSAPLT00000033055
20165113 - 20182656
17544