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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20169462_20171594_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20169462 - 20171594
Intron Length:
2133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GTATTATATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTATACTT
Flanking Amino Acid:
SVTFFWILVACFPSAIASHV
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.7
0.44
1
67.6
42.8
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
48
-0
2.2
76.08
41.4

Associated Gene:

Gene:
MLC1
Ensembl Gene ID:
ENSAPLG00000016154
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033055
20165113 - 20182656
17544
ENSAPLT00000026583
20165113 - 20182875
17763
ENSAPLT00000016862
20165113 - 20182656
17544
ENSAPLT00000034625
20165113 - 20183258
18146