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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201696938_201698609_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201696938 - 201698609
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TCACCTTTGACT
Flanking Amino Acid:
FYVDIDKITEDEVQLTNKDP
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
75.7
0.58
1
69
41.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
68.5
0.66
1.2
77.23
39.4

Associated Gene:

Gene:
SLCO2B1
Ensembl Gene ID:
ENSAPLG00000003485
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003603
201674302 - 201709590
35289